fitbenchmarking package

Subpackages

• fitbenchmarking.cli package
  • Submodules
    • fitbenchmarking.cli.checkpoint_handler module
      • generate_report()
      • get_parser()
      • main()
      • merge()
      • merge_data_sets()
      • merge_problems()
      • merge_results()
    • fitbenchmarking.cli.exception_handler module
      • exception_handler()
    • fitbenchmarking.cli.main module
      • get_parser()
      • main()
      • run()
  • Module contents
• fitbenchmarking.controllers package
  • Submodules
    • fitbenchmarking.controllers.aoclda_controller module
      • AOCLDAController
    • fitbenchmarking.controllers.base_controller module
      • Controller
    • fitbenchmarking.controllers.bumps_controller module
      • BumpsController
    • fitbenchmarking.controllers.ceres_controller module
      • CeresController
      • CeresCostFunction
    • fitbenchmarking.controllers.controller_factory module
      • ControllerFactory
    • fitbenchmarking.controllers.dfo_controller module
      • DFOController
    • fitbenchmarking.controllers.galahad_controller module
      • GalahadController
    • fitbenchmarking.controllers.gofit_controller module
      • GOFitController
    • fitbenchmarking.controllers.gradient_free_controller module
      • GradientFreeController
    • fitbenchmarking.controllers.gsl_controller module
      • GSLController
    • fitbenchmarking.controllers.horace_controller module
      • HoraceController
    • fitbenchmarking.controllers.levmar_controller module
      • LevmarController
    • fitbenchmarking.controllers.lmfit_controller module
      • LmfitController
    • fitbenchmarking.controllers.mantid_controller module
      • MantidController
    • fitbenchmarking.controllers.matlab_controller module
      • MatlabController
    • fitbenchmarking.controllers.matlab_curve_controller module
      • MatlabCurveController
    • fitbenchmarking.controllers.matlab_mixin module
      • MatlabMixin
      • MatlabTimerInterface
    • fitbenchmarking.controllers.matlab_opt_controller module
      • MatlabOptController
    • fitbenchmarking.controllers.matlab_stats_controller module
      • MatlabStatsController
    • fitbenchmarking.controllers.minuit_controller module
      • MinuitController
    • fitbenchmarking.controllers.nlopt_controller module
      • NLoptController
    • fitbenchmarking.controllers.paramonte_controller module
      • ParamonteController
    • fitbenchmarking.controllers.ralfit_controller module
      • RALFitController
    • fitbenchmarking.controllers.scipy_controller module
      • ScipyController
    • fitbenchmarking.controllers.scipy_go_controller module
      • ScipyGOController
    • fitbenchmarking.controllers.scipy_leastsq_controller module
      • ScipyLeastSqController
    • fitbenchmarking.controllers.scipy_ls_controller module
      • ScipyLSController
    • fitbenchmarking.controllers.theseus_controller module
      • TheseusController
      • TheseusCostFunction
  • Module contents
• fitbenchmarking.core package
  • Submodules
    • fitbenchmarking.core.fitting_benchmarking module
      • Fit
    • fitbenchmarking.core.results_output module
      • check_max_solvers()
      • create_directories()
      • create_index_page()
      • create_plots()
      • create_problem_level_index()
      • display_page()
      • open_browser()
      • prepare_dash_app_and_run()
      • preprocess_data()
      • run_dash_app()
      • save_results()
      • update_warning()
  • Module contents
• fitbenchmarking.cost_func package
  • Submodules
    • fitbenchmarking.cost_func.base_cost_func module
      • CostFunc
    • fitbenchmarking.cost_func.cost_func_factory module
      • create_cost_func()
    • fitbenchmarking.cost_func.hellinger_nlls_cost_func module
      • HellingerNLLSCostFunc
    • fitbenchmarking.cost_func.loglike_nlls_cost_func module
      • LoglikeNLLSCostFunc
    • fitbenchmarking.cost_func.nlls_base_cost_func module
      • BaseNLLSCostFunc
    • fitbenchmarking.cost_func.nlls_cost_func module
      • NLLSCostFunc
    • fitbenchmarking.cost_func.poisson_cost_func module
      • PoissonCostFunc
    • fitbenchmarking.cost_func.weighted_nlls_cost_func module
      • WeightedNLLSCostFunc
  • Module contents
• fitbenchmarking.hessian package
  • Submodules
    • fitbenchmarking.hessian.analytic_hessian module
      • Analytic
    • fitbenchmarking.hessian.base_hessian module
      • Hessian
    • fitbenchmarking.hessian.best_available_hessian module
      • BestAvailable
    • fitbenchmarking.hessian.hessian_factory module
      • create_hessian()
    • fitbenchmarking.hessian.numdifftools_hessian module
      • Numdifftools
    • fitbenchmarking.hessian.scipy_hessian module
      • Scipy
  • Module contents
• fitbenchmarking.jacobian package
  • Submodules
    • fitbenchmarking.jacobian.analytic_jacobian module
      • Analytic
    • fitbenchmarking.jacobian.base_jacobian module
      • Jacobian
    • fitbenchmarking.jacobian.best_available_jacobian module
      • BestAvailable
    • fitbenchmarking.jacobian.default_jacobian module
      • Default
    • fitbenchmarking.jacobian.jacobian_factory module
      • create_jacobian()
    • fitbenchmarking.jacobian.numdifftools_jacobian module
      • Numdifftools
    • fitbenchmarking.jacobian.scipy_jacobian module
      • Scipy
  • Module contents
• fitbenchmarking.parsing package
  • Submodules
    • fitbenchmarking.parsing.bal_parser module
      • BALParser
    • fitbenchmarking.parsing.base_parser module
      • Parser
    • fitbenchmarking.parsing.cutest_parser module
      • CutestParser
    • fitbenchmarking.parsing.fitbenchmark_parser module
      • FitbenchmarkParser
    • fitbenchmarking.parsing.fitting_problem module
      • FittingProblem
      • correct_data()
    • fitbenchmarking.parsing.hogben_parser module
      • HogbenParser
    • fitbenchmarking.parsing.horace_parser module
      • HoraceParser
      • horace_on()
    • fitbenchmarking.parsing.ivp_parser module
      • IVPParser
    • fitbenchmarking.parsing.mantid_parser module
      • MantidParser
    • fitbenchmarking.parsing.mantiddev_parser module
      • MantidDevParser
    • fitbenchmarking.parsing.nist_data_functions module
      • format_function_scipy()
      • is_int()
      • is_safe()
      • nist_func_definition()
      • nist_hessian_definition()
      • nist_jacobian_definition()
    • fitbenchmarking.parsing.nist_parser module
      • NISTParser
    • fitbenchmarking.parsing.parser_factory module
      • ParserFactory
      • parse_problem_file()
    • fitbenchmarking.parsing.sasview_parser module
      • SASViewParser
    • fitbenchmarking.parsing.sscanss_parser module
      • SScanSSParser
  • Module contents
• fitbenchmarking.results_processing package
  • Submodules
    • fitbenchmarking.results_processing.acc_table module
      • AccTable
    • fitbenchmarking.results_processing.base_table module
      • Table
      • background_to_text()
      • calculate_contrast()
      • calculate_luminance()
    • fitbenchmarking.results_processing.compare_table module
      • CompareTable
    • fitbenchmarking.results_processing.energy_usage_table module
      • EnergyUsageTable
    • fitbenchmarking.results_processing.fitting_report module
      • create()
      • create_prob_group()
      • get_figure_paths()
    • fitbenchmarking.results_processing.local_min_table module
      • LocalMinTable
    • fitbenchmarking.results_processing.performance_profiler module
      • DashPerfProfile
      • adjust_values_to_plot()
      • compute_linestyle_combinations()
      • compute_step_values()
      • create_df()
      • create_plot()
      • create_plots_and_get_paths()
      • prepare_profile_data()
      • profile()
      • update_fig()
    • fitbenchmarking.results_processing.plots module
      • Plot
    • fitbenchmarking.results_processing.problem_summary_page module
      • create()
    • fitbenchmarking.results_processing.runtime_table module
      • RuntimeTable
    • fitbenchmarking.results_processing.tables module
      • create_results_tables()
      • generate_table()
      • load_table()
  • Module contents
• fitbenchmarking.utils package
  • Submodules
    • fitbenchmarking.utils.checkpoint module
      • Checkpoint
    • fitbenchmarking.utils.create_dirs module
      • css()
      • del_contents_of_dir()
      • figures()
      • group_results()
      • results()
      • support_pages()
    • fitbenchmarking.utils.debug module
      • get_printable_table()
    • fitbenchmarking.utils.exceptions module
      • CheckpointError
      • ControllerAttributeError
      • CostFuncError
      • FilePathError
      • FitBenchmarkException
      • FittingProblemError
      • IncompatibleCostFunctionError
      • IncompatibleHessianError
      • IncompatibleJacobianError
      • IncompatibleMinimizerError
      • IncompatibleProblemError
      • IncompatibleTableError
      • IncorrectBoundsError
      • MaxRuntimeError
      • MissingBoundsError
      • MissingSoftwareError
      • NoAnalyticJacobian
      • NoControllerError
      • NoDataError
      • NoHessianError
      • NoJacobianError
      • NoParserError
      • NoResultsError
      • NoSparseJacobianError
      • OptionsError
      • ParsingError
      • PlottingError
      • SparseJacobianIsDenseError
      • UnknownMinimizerError
      • UnknownTableError
      • UnsupportedMinimizerError
      • ValidationException
    • fitbenchmarking.utils.fitbm_result module
      • FittingResult
    • fitbenchmarking.utils.log module
      • get_logger()
      • setup_logger()
    • fitbenchmarking.utils.matlab_engine module
      • add_persistent_matlab_var()
      • clear_non_persistent_matlab_vars()
      • list_persistent_matlab_vars()
    • fitbenchmarking.utils.misc module
      • get_css()
      • get_js()
      • get_problem_files()
    • fitbenchmarking.utils.options module
      • Options
      • find_options_file()
      • read_list()
      • read_range()
    • fitbenchmarking.utils.output_grabber module
      • OutputGrabber
      • StreamGrabber
    • fitbenchmarking.utils.timer module
      • TimerWithMaxTime
    • fitbenchmarking.utils.write_files module
      • write_file()
  • Module contents

Module contents